PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C00725.2.p
Common NameEUGRSUZ_C00725, LOC104436346
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 196aa    MW: 22642.4 Da    PI: 9.8095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C00725.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.81.6e-201764148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l+++++ +G+++Wk++a++ g++R++k+c++rw++yl
  Eucgr.C00725.2.p 17 RGAWTAEEDQKLAQVIETHGPRRWKLVAAKAGLNRCGKSCRLRWLNYL 64
                      89********************************************97 PP

2Myb_DNA-binding491.4e-1570113146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Eucgr.C00725.2.p  70 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNS 113
                       78999*****************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0681268IPR017930Myb domain
SuperFamilySSF466891.1E-2915111IPR009057Homeodomain-like
SMARTSM007177.7E-171666IPR001005SANT/Myb domain
PfamPF002491.0E-191764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-251871IPR009057Homeodomain-like
CDDcd001678.35E-121964No hitNo description
SMARTSM007171.1E-1469117IPR001005SANT/Myb domain
PROSITE profilePS5129420.18869119IPR017930Myb domain
PfamPF002496.3E-1470113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2472120IPR009057Homeodomain-like
CDDcd001671.46E-974115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MPTTPTRSRC SKRDANRGAW TAEEDQKLAQ VIETHGPRRW KLVAAKAGLN RCGKSCRLRW  60
LNYLRPNIKR GNISDQEEDL ILRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNSRLSKKIK  120
QKESQSKFLE PDQSQDPRNN PSAMHSVADN DGGTSKREEE MKSDVSRDDF LDNFNEGPLN  180
LEWMSKFLEV DESWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30141194108B-MYB
1gv2_A3e-30171194105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C00725.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047393.11e-143PREDICTED: transcription factor MYB114-like
SwissprotP102903e-53MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A059CLE91e-143A0A059CLE9_EUCGR; Uncharacterized protein
STRINGPOPTR_0018s08500.12e-92(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-50myb domain protein 5